PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 142aa    MW: 16058.5 Da    PI: 4.4852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650018.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.3e-1227115196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 
                     f+ vlt+  v    +lv+p kf ++      + +  t+ + +g+ We+ +   ++s+ y   ++Wk F+ +n+Lk+gD +vF+ l+  s+++lv+
  XP_016650018.1  27 FDVVLTKTTVKPIYQLVVPGKFSATLP----SCTIPTFLTFRGKNWEMIY--HGSSS-YKRLDNWKVFAIDNNLKVGDACVFEqLEC-SSTRLVF 113
                     667888888888899999999987664....2335689999*********..66665.55555********************5444.5555554 PP

                     EE CS
              B3  95 kv 96 
                     +v
  XP_016650018.1 114 RV 115
                     43 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-1622116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1422117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-1625119No hitNo description
PROSITE profilePS5086310.17927121IPR003340B3 DNA binding domain
PfamPF023629.2E-1028114IPR003340B3 DNA binding domain
SMARTSM010190.003131121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGDLPPSNPV IELEGDEFWP LSEKPFFDVV LTKTTVKPIY QLVVPGKFSA TLPSCTIPTF  60
LTFRGKNWEM IYHGSSSYKR LDNWKVFAID NNLKVGDACV FEQLECSSTR LVFRVQILRG  120
DIPSEFLDKL DGDNVDAPIV LE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220940.11e-91hypothetical protein PRUPE_ppa025386mg, partial
TrEMBLM5X8611e-91M5X861_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640